STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI48595.1Geranylgeranylglyceryl phosphate synthase. (253 aa)    
Predicted Functional Partners:
AEI49532.1
Geranylgeranylglycerol-phosphate geranylgeranyltransferase.
 
  
 0.980
AEI48594.1
Hypothetical protein.
       0.793
AEI47213.1
Glycosyl transferase family 2.
  
     0.743
AEI47741.1
Hypothetical protein.
  
     0.705
AEI46516.1
O-methyltransferase-like protein.
  
    0.685
AEI46703.1
Radical SAM domain protein.
  
     0.666
AEI50480.1
Glycosyl transferase family 2.
  
     0.657
AEI48952.1
Hypothetical protein.
  
     0.643
AEI49375.1
Surface antigen (D15).
  
     0.556
AEI51120.1
PpiC-type peptidyl-prolyl cis-trans isomerase.
  
     0.541
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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