STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48606.1Glycoside hydrolase family 2 sugar binding protein. (874 aa)    
Predicted Functional Partners:
AEI48550.1
Glycosyl hydrolase family 88.
    0.884
AEI51088.1
Glycosyl hydrolase family 88.
  
     0.697
AEI47488.1
Beta-galactosidase I.
  
     0.691
AEI47832.1
L-rhamnose mutarotase.
 
   
 0.679
AEI48548.1
Glycosyl hydrolase family 88.
 
     0.676
AEI50570.1
Hypothetical protein.
  
    0.628
AEI48551.1
Transcriptional regulator, GntR family.
 
     0.626
AEI47825.1
Xylan 1,4-beta-xylosidase.
  
     0.601
AEI48664.1
Exo-poly-alpha-galacturonosidase.
 
 
 0.583
AEI47418.1
Transcriptional regulator, GntR family.
  
     0.570
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.