STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI48609.1Histidine triad (HIT) protein. (281 aa)    
Predicted Functional Partners:
AEI48607.1
Hypothetical protein.
 
     0.928
AEI48608.1
RNA 2'-phosphotransferase.
 
    0.809
AEI48677.1
XisH protein.
  
     0.578
AEI48245.1
DNA-directed RNA polymerase subunit beta'.
   
 0.561
AEI50587.1
Hypothetical protein.
   
 
  0.510
AEI48244.1
DNA-directed RNA polymerase subunit beta.
    
  0.503
AEI51581.1
Outer membrane efflux protein.
  
     0.495
AEI48927.1
XisI protein.
  
     0.484
AEI48676.1
XisI protein.
  
     0.479
AEI48610.1
Hypothetical protein.
       0.474
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.