STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48611.1Hypothetical protein. (368 aa)    
Predicted Functional Partners:
AEI48610.1
Hypothetical protein.
 
     0.955
AEI48721.1
Methyltransferase type 11.
   
   0.772
AEI48608.1
RNA 2'-phosphotransferase.
 
     0.764
AEI48257.1
RNA-directed DNA polymerase.
  
     0.685
AEI46721.1
NADP oxidoreductase coenzyme F420-dependent.
  
     0.488
AEI48607.1
Hypothetical protein.
       0.474
AEI48609.1
Histidine triad (HIT) protein.
       0.474
AEI48298.1
Hypothetical protein.
  
     0.436
AEI48612.1
ATP-dependent DNA helicase RecQ.
       0.423
AEI51589.1
Hypothetical protein.
  
     0.403
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.