STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48618.1GDP-L-fucose synthase. (313 aa)    
Predicted Functional Partners:
AEI47937.1
GDP-mannose 4,6-dehydratase.
 0.996
Runsl_3943
Glycosyl transferase family 2.
 
    0.648
AEI48617.1
Two component transcriptional regulator, LytTR family.
       0.588
AEI48616.1
Putative signal transduction histidine kinase.
       0.562
AEI48121.1
Ribosomal protein S19.
   
  0.546
AEI49055.1
Glycosyl transferase family 2.
 
    0.541
AEI48119.1
Ribosomal protein S3.
   
  0.514
AEI48836.1
Ribosomal protein S12.
   
 0.505
AEI48116.1
30S ribosomal protein S17.
   
  0.503
AEI48112.1
30S ribosomal protein S14.
   
  0.501
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.