STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI48619.1Hydroxymethylbutenyl pyrophosphate reductase. (408 aa)    
Predicted Functional Partners:
AEI46837.1
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase.
 
 
 0.981
AEI49288.1
Polyprenyl synthetase.
 
 
 0.923
AEI49349.1
RNA binding S1 domain protein.
 
 
 0.921
AEI50818.1
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
 
   
 0.781
AEI51717.1
1-deoxy-D-xylulose 5-phosphate reductoisomerase.
 
   
 0.758
AEI46531.1
4-diphosphocytidyl-2-C-methyl-D- erythritolkinase.
 
   
 0.650
AEI48018.1
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase.
 
   
 0.649
AEI46687.1
Peptidyl-tRNA hydrolase.
    
 
 0.627
AEI47262.1
1-deoxy-D-xylulose-5-phosphate synthase.
 
  
 0.587
AEI48620.1
Metallophosphoesterase.
       0.508
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (28%) [HD]