STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48639.1Protein of unknown function DUF1080. (249 aa)    
Predicted Functional Partners:
AEI50830.1
Protein of unknown function DUF1080.
    
0.927
AEI48640.1
Glycosidase related protein.
       0.773
AEI48905.1
Oxidoreductase domain protein.
 
     0.769
AEI48795.1
Oxidoreductase domain protein.
 
     0.767
AEI49120.1
Oxidoreductase domain protein.
 
     0.757
AEI51623.1
Oxidoreductase domain protein.
 
     0.746
AEI51893.1
Protein of unknown function DUF1080.
  
     0.745
AEI51247.1
Oxidoreductase domain protein.
 
     0.732
AEI47296.1
Oxidoreductase domain protein.
 
     0.691
AEI49684.1
Oxidoreductase domain protein.
 
     0.677
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.