STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48645.1Peptidase M28. (547 aa)    
Predicted Functional Partners:
AEI48644.1
Rhomboid family protein.
       0.773
AEI48646.1
Enoyl-CoA hydratase.
  
    0.766
AEI50377.1
WD40-like beta Propeller containing protein.
 
     0.605
AEI48306.1
Aminopeptidase.
  
 
   0.520
AEI48647.1
3-oxoacyl-(acyl-carrier-protein) reductase.
   
  0.520
AEI48558.1
Zn-dependent aminopeptidase.
  
 
   0.518
AEI48227.1
Aminopeptidase.
  
 
   0.514
AEI48643.1
Glycerol-3-phosphate acyltransferase.
       0.497
AEI48684.1
N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase.
  
    0.458
AEI46670.1
Amidohydrolase.
  
     0.421
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.