STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI48650.1Transcriptional regulator, AraC family. (308 aa)    
Predicted Functional Partners:
AEI47514.1
Hypothetical protein.
  
     0.767
AEI51270.1
Hypothetical protein.
  
     0.765
AEI50863.1
Hypothetical protein.
  
     0.764
AEI48014.1
Hypothetical protein.
  
     0.761
AEI48224.1
Hypothetical protein.
  
     0.753
AEI49564.1
Hypothetical protein.
  
     0.752
AEI51127.1
Hypothetical protein.
  
     0.722
Runsl_5229
Hypothetical protein.
  
     0.720
AEI51912.1
Aminotransferase class V.
  
     0.719
AEI47031.1
Hypothetical protein.
  
     0.718
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.