STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48657.14-deoxy-L-threo-5-hexosulose-uronateketol- isomerase. (276 aa)    
Predicted Functional Partners:
AEI48658.1
2-deoxy-D-gluconate 3-dehydrogenase.
 
 0.987
AEI51080.1
2-deoxy-D-gluconate 3-dehydrogenase.
 
 
 0.954
AEI48692.1
Cupin 2 conserved barrel domain protein.
 
  
  0.930
AEI48706.1
4-deoxy-L-threo-5-hexosulose-uronateketol- isomerase.
  
  
 
0.903
AEI51084.1
Glycosyl hydrolase family 88.
 
   
 0.741
AEI48693.1
Glycosyl hydrolase family 88.
 
   
 0.730
AEI46867.1
Glycosyl hydrolase family 88.
 
   
 0.536
AEI48660.1
Transcriptional regulator, LacI family.
     
 0.456
AEI51899.1
Signal peptidase I.
   
  
 0.449
AEI48664.1
Exo-poly-alpha-galacturonosidase.
 
   
 0.441
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.