STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI48660.1Transcriptional regulator, LacI family. (343 aa)    
Predicted Functional Partners:
AEI50717.1
Glutamate synthase (ferredoxin).
    
 
 0.860
AEI48659.1
Hypothetical protein.
       0.768
AEI48661.1
Cell wall hydrolase/autolysin.
       0.757
AEI48662.1
Hypothetical protein.
       0.615
AEI49999.1
ABC-type transporter, integral membrane subunit.
 
  
 0.557
AEI48658.1
2-deoxy-D-gluconate 3-dehydrogenase.
  
   0.534
AEI48657.1
4-deoxy-L-threo-5-hexosulose-uronateketol- isomerase.
  
  
 0.462
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.