STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48661.1Cell wall hydrolase/autolysin. (407 aa)    
Predicted Functional Partners:
AEI49439.1
Cell wall hydrolase/autolysin.
  
  
 
0.921
AEI48660.1
Transcriptional regulator, LacI family.
       0.757
AEI48659.1
Hypothetical protein.
       0.751
AEI47254.1
Peptidase M23.
 
 
 0.680
AEI48662.1
Hypothetical protein.
       0.628
AEI47738.1
Outer membrane lipoprotein carrier protein LolA.
    
   0.589
AEI48658.1
2-deoxy-D-gluconate 3-dehydrogenase.
       0.487
AEI48271.1
Putative membrane protein.
  
     0.475
AEI49183.1
Chondroitin AC lyase.
  
   
 0.427
AEI50442.1
YjeF-related protein.
 
   
 0.427
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.