STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48667.1OmpA/MotB domain protein. (540 aa)    
Predicted Functional Partners:
AEI49218.1
OmpA/MotB domain protein.
  
     0.762
AEI47779.1
OmpA/MotB domain protein.
  
     0.757
AEI48666.1
FG-GAP repeat protein.
       0.705
AEI48668.1
Hypothetical protein.
       0.678
AEI48665.1
Hypothetical protein.
       0.668
AEI48669.1
Hypothetical protein.
  
    0.657
AEI48670.1
Hypothetical protein.
       0.639
AEI47159.1
OmpA/MotB domain protein.
  
 
 0.607
AEI49730.1
Protein of unknown function DUF214.
  
 
   0.462
AEI47875.1
Lytic transglycosylase catalytic.
  
     0.447
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.