STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48684.1N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase. (348 aa)    
Predicted Functional Partners:
AEI51198.1
Cyanophycinase-like protein.
   
 0.804
AEI48685.1
Glycoside hydrolase family 29 (alpha-L-fucosidase).
 
   
 0.692
AEI48683.1
Glycoside hydrolase family 29 (alpha-L-fucosidase).
 
   
 0.616
AEI48011.1
Copper homeostasis protein cutC.
 
     0.591
AEI50980.1
Flavodoxin/nitric oxide synthase.
   
    0.472
AEI48645.1
Peptidase M28.
  
    0.458
AEI48282.1
Alpha-1,2-mannosidase.
 
     0.411
AEI48547.1
Sulfate adenylyltransferase, large subunit.
   
    0.407
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.