STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48689.1Glycoside hydrolase family 18. (320 aa)    
Predicted Functional Partners:
AEI49190.1
Beta-N-acetylhexosaminidase.
 
 
 0.940
Runsl_3458
Beta-N-acetylhexosaminidase.
 
 
 0.940
AEI48246.1
Beta-N-acetylhexosaminidase.
 
 
 0.936
AEI50237.1
Beta-N-acetylhexosaminidase.
 
 
 0.934
AEI46999.1
Beta-N-acetylhexosaminidase.
     
 0.915
AEI48432.1
Beta-N-acetylhexosaminidase., Beta-lactamase.
     
 0.915
AEI46564.1
Fibronectin type III domain protein.
 
 
 0.772
AEI48688.1
Lipolytic protein G-D-S-L family.
       0.697
AEI50292.1
Hypothetical protein.
   
 
 0.685
AEI46533.1
Glycoside hydrolase family 9.
 
   
 0.565
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.