STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48693.1Glycosyl hydrolase family 88. (636 aa)    
Predicted Functional Partners:
AEI48664.1
Exo-poly-alpha-galacturonosidase.
   
 0.975
AEI48692.1
Cupin 2 conserved barrel domain protein.
 
     0.750
AEI48657.1
4-deoxy-L-threo-5-hexosulose-uronateketol- isomerase.
 
   
 0.730
AEI48706.1
4-deoxy-L-threo-5-hexosulose-uronateketol- isomerase.
 
   
 0.713
AEI48694.1
Tagaturonate reductase.
 
    0.668
AEI47488.1
Beta-galactosidase I.
  
     0.561
AEI48964.1
Alpha-glucuronidase.
 
     0.550
AEI46477.1
Sialate O-acetylesterase.
 
      0.540
AEI48695.1
Uronate isomerase.
     
 0.529
AEI46863.1
Protein of unknown function DUF1593.
  
  
 0.507
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.