STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48695.1Uronate isomerase. (474 aa)    
Predicted Functional Partners:
AEI48694.1
Tagaturonate reductase.
 
 
 0.993
AEI48477.1
Tagaturonate reductase.
 
 
 0.982
AEI48962.1
Mannonate dehydratase.
 
  
 0.934
AEI49233.1
Mannonate dehydratase.
 
  
 0.933
AEI49041.1
Beta-glucuronidase.
    
 0.910
AEI47629.1
Mannonate dehydratase.
 
  
 0.905
AEI46828.1
GHMP kinase.
     
  0.900
AEI48696.1
PfkB domain protein.
 
   
 0.887
AEI48188.1
Coagulation factor 5/8 type domain protein.
 
  
 0.858
AEI47627.1
Galactarate dehydratase.
  
 0.849
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.