STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48706.14-deoxy-L-threo-5-hexosulose-uronateketol- isomerase. (278 aa)    
Predicted Functional Partners:
AEI48658.1
2-deoxy-D-gluconate 3-dehydrogenase.
 
 0.965
AEI51080.1
2-deoxy-D-gluconate 3-dehydrogenase.
 
 
 0.953
AEI48692.1
Cupin 2 conserved barrel domain protein.
 
  
  0.931
AEI48657.1
4-deoxy-L-threo-5-hexosulose-uronateketol- isomerase.
  
  
 
0.903
AEI51084.1
Glycosyl hydrolase family 88.
 
   
 0.732
AEI48693.1
Glycosyl hydrolase family 88.
 
   
 0.713
AEI48707.1
Ribosomal subunit interface protein.
  
    0.588
AEI48705.1
CDP-paratose 2-epimerase.
       0.576
AEI48704.1
Low affinity potassium transport system protein kup.
       0.572
AEI48703.1
Low affinity potassium transport system protein kup.
       0.543
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.