STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48714.1Two component transcriptional regulator, LytTR family. (241 aa)    
Predicted Functional Partners:
AEI48715.1
Putative signal transduction histidine kinase.
 
   0.954
AEI47915.1
Putative signal transduction histidine kinase.
 
   0.802
AEI49171.1
Putative signal transduction histidine kinase.
 
   0.800
AEI50957.1
Putative signal transduction histidine kinase.
 
   0.800
AEI47817.1
Putative signal transduction histidine kinase.
 
   0.799
AEI48761.1
Putative signal transduction histidine kinase.
 
   0.799
AEI48864.1
Putative signal transduction histidine kinase.
 
   0.799
AEI49108.1
Putative signal transduction histidine kinase.
 
   0.798
AEI51924.1
Putative signal transduction histidine kinase.
 
   0.798
AEI47147.1
Putative signal transduction histidine kinase.
 
   0.797
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.