STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48736.13-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. (165 aa)    
Predicted Functional Partners:
AEI48739.1
N-acetylneuraminate synthase.
   
 0.986
AEI50820.1
2-dehydro-3-deoxyphosphooctonate aldolase.
   
 0.947
AEI50042.1
3-deoxy-manno-octulosonate cytidylyltransferase.
   
 0.841
AEI48738.1
N-acylneuraminate cytidylyltransferase.
 
 
   0.826
AEI48734.1
Hypothetical protein.
       0.773
AEI48735.1
Hypothetical protein.
       0.773
AEI48733.1
Virulence factor MVIN family protein.
       0.705
AEI48737.1
Hypothetical protein.
       0.675
AEI50330.1
Tetraacyldisaccharide 4'-kinase.
 
   
 0.658
AEI51018.1
N-acetylneuraminate synthase.
 
   
 0.639
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.