STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48740.1Ferrochelatase. (353 aa)    
Predicted Functional Partners:
AEI49406.1
Conserved hypothetical protein CHP00701.
 
  
 0.951
AEI47879.1
Uroporphyrinogen decarboxylase.
 
  
 0.932
AEI49359.1
Protoheme IX farnesyltransferase.
     
 0.923
AEI47220.1
Mg-chelatase subunit ChlI-like protein.
  
 
 0.917
AEI48237.1
Major facilitator superfamily MFS_1.
 
      0.874
AEI50918.1
Coproporphyrinogen oxidase.
 
  
 0.809
AEI48955.1
ATP-dependent Clp protease proteolytic subunit.
   
 0.662
AEI48926.1
Porphobilinogen deaminase.
 
  
 0.592
AEI51043.1
Succinate dehydrogenase and fumarate reductase iron-sulfur protein.
    
 
 0.556
AEI47926.1
Porphobilinogen synthase.
 
  
 0.555
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.