STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48764.1Transcriptional regulator PadR family protein. (170 aa)    
Predicted Functional Partners:
AEI48763.1
Protein of unknown function DUF214.
       0.782
AEI51254.1
Hypothetical protein.
  
     0.595
AEI49478.1
Protein of unknown function DUF214.
 
     0.576
AEI49554.1
Hypothetical protein.
  
     0.548
AEI46821.1
Peptidase M14 carboxypeptidase A.
  
     0.495
AEI50032.1
Hypothetical protein.
  
     0.488
AEI48765.1
Major facilitator superfamily MFS_1.
       0.479
AEI50033.1
Hypothetical protein.
  
     0.476
AEI47830.1
alpha-L-arabinofuranosidase domain protein.
  
     0.472
AEI51187.1
Hypothetical protein.
  
     0.468
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.