STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48773.1Outer membrane protein assembly complex, YaeT protein. (881 aa)    
Predicted Functional Partners:
AEI50588.1
Outer membrane assembly lipoprotein YfiO.
 
 
 0.981
AEI50542.1
Membrane protein involved in aromatic hydrocarbon degradation.
  
 
 
 0.970
AEI48772.1
Outer membrane chaperone Skp (OmpH).
 
  
 0.926
AEI48774.1
Undecaprenyl pyrophosphate synthase.
 
    0.913
AEI48771.1
Outer membrane chaperone Skp (OmpH).
 
  
 0.909
AEI51718.1
Membrane-associated zinc metalloprotease.
 
  
 0.842
AEI47277.1
(3R)-hydroxymyristoyl-(acyl-carrier- protein)dehydratase.
 
  
 0.803
AEI48790.1
Peptidylprolyl isomerase FKBP-type.
   
 
 0.796
AEI48817.1
Peptidylprolyl isomerase FKBP-type.
   
 
 0.796
AEI49335.1
FKBP-type peptidyl-prolyl isomerase domain protein.
   
 
 0.796
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.