STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48774.1Undecaprenyl pyrophosphate synthase. (249 aa)    
Predicted Functional Partners:
AEI49397.1
Phosphatidate cytidylyltransferase.
  
 0.984
AEI49288.1
Polyprenyl synthetase.
 
 
 0.977
Runsl_3104
Trans-hexaprenyltranstransferase.
 
 
 0.956
AEI51126.1
Undecaprenyl-diphosphatase.
     
 0.923
AEI51717.1
1-deoxy-D-xylulose 5-phosphate reductoisomerase.
  
  
 0.922
AEI48773.1
Outer membrane protein assembly complex, YaeT protein.
 
    0.913
AEI51098.1
Phosphoesterase PA-phosphatase related protein.
  
 
 0.911
AEI50500.1
Prolyl-tRNA synthetase.
  
  
 0.860
AEI47494.1
Ribosome-recycling factor.
  
  
 0.845
AEI48884.1
Squalene/phytoene synthase.
   
 
 0.833
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.