STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48779.1UDP-glucose 4-epimerase. (340 aa)    
Predicted Functional Partners:
AEI49421.1
UTP-glucose-1-phosphate uridylyltransferase.
  
 0.951
AEI49568.1
Nucleotide sugar dehydrogenase.
  
 
 0.940
AEI47217.1
UDP-galactopyranose mutase.
    
 0.926
AEI51343.1
Aldose 1-epimerase.
 
  
 0.917
AEI50879.1
Galactokinase.
 
 
 0.916
AEI50937.1
GHMP kinase.
  
 
 0.895
AEI48575.1
Mannose-1-phosphate guanylyltransferase.
    
 0.846
AEI48309.1
Glucose-1-phosphate thymidylyltransferase.
    
 0.844
AEI51003.1
Glucose-1-phosphate thymidylyltransferase.
    
 0.844
AEI48780.1
dTDP-glucose 4,6-dehydratase.
 
  
0.817
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.