STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48788.1Phosphoesterase RecJ domain protein. (342 aa)    
Predicted Functional Partners:
AEI48547.1
Sulfate adenylyltransferase, large subunit.
   
 
  0.906
AEI48546.1
Sulfate adenylyltransferase, small subunit.
   
 
  0.903
AEI48544.1
Adenylylsulfate reductase, thioredoxin dependent.
   
 
  0.901
AEI50234.1
Ribosome-binding factor A.
  
    0.808
AEI51125.1
tRNA pseudouridine synthase B.
  
 0.655
AEI48789.1
Peptidylprolyl isomerase.
       0.625
AEI48787.1
Nucleoside diphosphate kinase.
       0.598
AEI49394.1
Translation initiation factor IF-2.
 
    0.573
AEI50093.1
Valyl-tRNA synthetase.
 
     0.559
AEI48483.1
2,3 cyclic-nucleotide 2-phosphodiesterase.
 
   
 0.479
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.