STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48789.1Peptidylprolyl isomerase. (293 aa)    
Predicted Functional Partners:
AEI49944.1
Peptidyl-prolyl cis-trans isomerase cyclophilin type.
 
 0.935
AEI46594.1
Hypothetical protein.
    
   0.743
AEI46858.1
Aspartate kinase.
   
   0.725
AEI50542.1
Membrane protein involved in aromatic hydrocarbon degradation.
    
 
 0.702
AEI48790.1
Peptidylprolyl isomerase FKBP-type.
 
    
0.671
AEI51886.1
Heat shock protein Hsp90.
   
 0.668
AEI48103.1
Translation initiation factor IF-1.
   
   0.649
AEI48788.1
Phosphoesterase RecJ domain protein.
       0.625
AEI50890.1
Tetratricopeptide TPR_1 repeat-containing protein.
  
 
 0.575
AEI50086.1
Hypothetical protein.
    
 0.557
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.