STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48790.1Peptidylprolyl isomerase FKBP-type. (311 aa)    
Predicted Functional Partners:
AEI48773.1
Outer membrane protein assembly complex, YaeT protein.
   
 
 0.796
AEI47899.1
Hypothetical protein.
    
 
 0.760
AEI46594.1
Hypothetical protein.
    
   0.743
AEI46858.1
Aspartate kinase.
   
   0.725
AEI50542.1
Membrane protein involved in aromatic hydrocarbon degradation.
    
 
 0.702
AEI48789.1
Peptidylprolyl isomerase.
 
    
0.671
AEI51886.1
Heat shock protein Hsp90.
   
 0.668
AEI48103.1
Translation initiation factor IF-1.
   
   0.649
AEI48791.1
Nucleoside-triphosphatase rdgB.
  
    0.642
AEI50890.1
Tetratricopeptide TPR_1 repeat-containing protein.
  
 
 0.577
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.