STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48797.1Surface antigen variable number repeat-containing protein. (480 aa)    
Predicted Functional Partners:
AEI48796.1
Peptidase M15D vanX D-ala-D-ala dipeptidase.
       0.773
AEI46594.1
Hypothetical protein.
  
 
   0.716
AEI49849.1
Hypothetical protein.
  
     0.710
AEI51040.1
Hypothetical protein.
  
     0.706
AEI49375.1
Surface antigen (D15).
 
  
 0.689
AEI49649.1
Protein of unknown function DUF490.
 
   
 0.688
AEI50735.1
Hypothetical protein.
  
     0.685
AEI47046.1
Hypothetical protein.
  
     0.680
AEI47511.1
Hypothetical protein.
  
     0.670
AEI50400.1
Hypothetical protein.
  
     0.669
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.