STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48803.13-dehydroquinate synthase. (388 aa)    
Predicted Functional Partners:
AEI51709.1
Shikimate kinase.
  
 0.986
AEI49058.1
3-phosphoshikimate 1-carboxyvinyltransferase.
  
 0.961
AEI48804.1
UbiA prenyltransferase.
 
   
 0.948
AEI48805.1
TatD-related deoxyribonuclease.
 
     0.945
AEI48806.1
Hypothetical protein.
 
   
 0.943
AEI51915.1
3-dehydroquinate dehydratase.
 
 0.941
AEI47861.1
Chorismate synthase.
 
  
 0.936
AEI50848.1
3-dehydroquinate synthase.
  
  
 
0.925
AEI48802.1
Hypothetical protein.
 
     0.897
AEI48353.1
3-deoxy-7-phosphoheptulonate synthase.
 
  
 0.887
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.