STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48808.1Hypothetical protein. (354 aa)    
Predicted Functional Partners:
AEI48809.1
Hypothetical protein.
 
    0.893
AEI48810.1
RNA polymerase, sigma-24 subunit, ECF subfamily.
 
    0.621
AEI49743.1
Phage shock protein C, PspC.
 
  
 0.570
AEI48330.1
Hypothetical protein.
  
     0.546
AEI48331.1
Hypothetical protein.
  
     0.538
AEI50037.1
Peptidase M56 BlaR1.
  
     0.423
AEI51859.1
Membrane protein of unknown function.
  
  
 0.416
AEI48038.1
Anti-sigma-K factor RskA.
  
     0.408
AEI48333.1
Hypothetical protein.
  
     0.408
AEI51251.1
Hypothetical protein.
  
     0.402
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.