STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48824.1Hypothetical protein. (290 aa)    
Predicted Functional Partners:
AEI47914.1
Hypothetical protein.
 
     0.632
AEI48293.1
Hypothetical protein.
  
     0.613
AEI48294.1
Hypothetical protein.
  
     0.596
Runsl_2414
Hypothetical protein.
       0.550
AEI48823.1
Cytochrome c-related protein.
       0.550
AEI50053.1
Hypothetical protein.
  
     0.544
AEI47913.1
Protein of unknown function DUF95 transmembrane.
  
     0.537
AEI51152.1
Hypothetical protein.
  
     0.524
AEI51001.1
Hypothetical protein.
  
     0.498
AEI47154.1
Protein of unknown function DUF490.
  
     0.483
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.