STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48831.1Protein of unknown function, Porph ging. (263 aa)    
Predicted Functional Partners:
AEI48832.1
TonB-dependent receptor.
 
     0.914
AEI48830.1
Hypothetical protein.
       0.741
AEI51795.1
Protein of unknown function DUF303 acetylesterase.
  
     0.618
AEI46636.1
Glycosyl transferase family 39.
  
     0.600
AEI49877.1
Hypothetical protein.
  
     0.584
AEI51196.1
Protein of unknown function DUF303 acetylesterase.
  
     0.584
AEI48535.1
TonB-dependent receptor.
 
     0.577
AEI48510.1
Hypothetical protein.
  
     0.544
Runsl_0856
PKD domain containing protein.
  
     0.534
AEI51432.1
Hypothetical protein.
  
     0.532
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.