STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48845.1Cystathionine beta-lyase. (386 aa)    
Predicted Functional Partners:
AEI47281.1
Cysteine synthase B.
 
 0.799
AEI46858.1
Aspartate kinase.
  
  
 0.749
AEI51703.1
5,10-methylenetetrahydrofolate reductase.
  
 
 0.720
AEI51593.1
Methionine synthase.
  
  
 0.700
AEI48243.1
50S ribosomal protein L7/L12.
    
   0.558
AEI48846.1
Integral membrane sensor signal transduction histidine kinase.
       0.533
AEI48847.1
Two component transcriptional regulator, winged helix family.
     
 0.533
AEI47838.1
Hypothetical protein.
  
  
 0.506
AEI48752.1
Amidophosphoribosyltransferase.
  
 
 0.438
AEI50717.1
Glutamate synthase (ferredoxin).
     
 0.434
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.