STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48885.1Phytoene desaturase. (517 aa)    
Predicted Functional Partners:
AEI48884.1
Squalene/phytoene synthase.
 
 0.999
AEI46690.1
Lycopene beta and epsilon cyclase.
 
 
 0.937
AEI50387.1
Lycopene beta and epsilon cyclase.
 
 
 0.937
AEI47808.1
Fatty acid hydroxylase.
 
   
 0.858
AEI49836.1
Protein of unknown function DUF422.
 
   
 0.665
AEI47822.1
Deoxyribodipyrimidine photo-lyase.
 
  
 0.641
AEI49835.1
Transcriptional regulator, MerR family.
 
   
 0.469
AEI47103.1
Cryptochrome, DASH family.
 
  
 0.446
AEI48423.1
Hypothetical protein.
 
  
 0.428
AEI48270.1
Phytoene desaturase.
 
    
0.414
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.