STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48887.1RagB/SusD domain-containing protein. (518 aa)    
Predicted Functional Partners:
AEI48888.1
TonB-dependent receptor plug.
 
     0.920
AEI47072.1
TonB-dependent receptor plug.
 
 
   0.810
AEI47311.1
TonB-dependent receptor plug.
 
     0.774
AEI51835.1
TonB-dependent receptor plug.
 
     0.735
AEI51228.1
TonB-dependent receptor plug.
 
 
   0.727
AEI49032.1
TonB-dependent receptor plug.
 
     0.640
AEI49131.1
Hypothetical protein.
  
     0.616
AEI49137.1
Hypothetical protein.
  
 
   0.611
AEI49136.1
TonB-dependent receptor plug.
  
 
   0.605
AEI51229.1
RagB/SusD domain-containing protein.
  
     0.604
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.