STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48914.1UvrD/REP helicase. (777 aa)    
Predicted Functional Partners:
AEI46753.1
Exonuclease RNase T and DNA polymerase III.
  
  
 0.921
AEI49566.1
Protein recA.
 
 
 0.907
AEI51034.1
DNA topoisomerase I.
 
 
 0.905
AEI47860.1
DNA polymerase III, beta subunit.
 
 
 0.900
AEI48486.1
DNA polymerase I.
 
 
 0.890
AEI47259.1
DNA mismatch repair protein mutL.
  
 
 0.851
AEI48244.1
DNA-directed RNA polymerase subunit beta.
  
 
 
 0.841
AEI49279.1
UvrABC system protein C.
 
  
 0.838
AEI50182.1
DNA repair protein RadA.
  
  
 0.823
AEI46535.1
SMC domain protein.
  
 
 0.804
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.