STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48915.1Protein of unknown function DUF820. (190 aa)    
Predicted Functional Partners:
AEI48600.1
Protein of unknown function DUF820.
  
     0.665
AEI48914.1
UvrD/REP helicase.
       0.651
AEI48924.1
Protein of unknown function DUF820.
  
     0.631
AEI48614.1
Protein of unknown function DUF820.
  
     0.627
AEI46917.1
Protein of unknown function DUF820.
  
     0.586
AEI50015.1
Protein of unknown function DUF820.
  
     0.550
AEI50004.1
Protein of unknown function DUF820.
  
     0.462
AEI50688.1
Hypothetical protein.
  
     0.420
AEI48677.1
XisH protein.
  
     0.409
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.