STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48920.1Protein of unknown function DUF2306, membrane. (222 aa)    
Predicted Functional Partners:
AEI48921.1
Tryptophan synthase beta chain.
       0.773
AEI48922.1
Phosphoribosylanthranilate isomerase.
       0.773
AEI48923.1
Indole-3-glycerol-phosphate synthase.
       0.732
AEI48924.1
Protein of unknown function DUF820.
       0.732
AEI48925.1
Anthranilate phosphoribosyltransferase.
       0.732
AEI48926.1
Porphobilinogen deaminase.
       0.680
AEI48919.1
Hypothetical protein.
       0.625
AEI48927.1
XisI protein.
       0.593
AEI47792.1
Hypothetical protein.
  
     0.525
AEI48928.1
PfkB domain protein.
       0.472
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.