STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Runsl_2546Hypothetical protein. (343 aa)    
Predicted Functional Partners:
AEI47039.1
acyl-CoA reductase.
 
 
 
 0.823
AEI46658.1
Radical SAM domain protein.
  
     0.702
AEI49466.1
Acetylornithine transaminase.
 
    0.622
AEI48948.1
Hypothetical protein.
       0.578
AEI48136.1
Hypothetical protein.
  
     0.569
AEI50962.1
Gliding motility-associated protein GldC.
  
     0.566
AEI51455.1
Protein of unknown function DUF2480.
  
     0.554
AEI50098.1
Orn/DAP/Arg decarboxylase 2.
  
     0.546
AEI46485.1
Hypothetical protein.
  
     0.505
AEI50897.1
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase.
  
     0.495
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.