STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48951.1Hypothetical protein. (390 aa)    
Predicted Functional Partners:
AEI47899.1
Hypothetical protein.
  
 
 0.969
AEI51183.1
TPR repeat-containing protein.
  
 
 
 0.942
AEI48772.1
Outer membrane chaperone Skp (OmpH).
  
   0.941
AEI48203.1
Hypothetical protein.
 
 
 0.928
AEI48952.1
Hypothetical protein.
 
   
 0.901
AEI50437.1
Peptidase S8 and S53 subtilisin kexin sedolisin.
 
 
   0.827
AEI49811.1
Peptidoglycan glycosyltransferase.
  
 
 0.785
AEI50221.1
Penicillin-binding protein 2.
  
 
 0.785
AEI50585.1
Hypothetical protein.
  
     0.774
AEI50869.1
Hypothetical protein.
   
 
 0.769
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.