STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48953.1Hypothetical protein. (215 aa)    
Predicted Functional Partners:
AEI48952.1
Hypothetical protein.
       0.571
AEI48136.1
Hypothetical protein.
  
     0.564
AEI51169.1
Hypothetical protein.
  
     0.542
AEI49766.1
O-antigen polymerase.
  
     0.484
AEI49316.1
Hypothetical protein.
  
     0.441
AEI47482.1
UPF0747 protein.
 
     0.429
AEI51455.1
Protein of unknown function DUF2480.
  
     0.418
AEI48749.1
Lysine exporter protein (LYSE/YGGA).
  
     0.416
AEI49554.1
Hypothetical protein.
  
     0.409
AEI50292.1
Hypothetical protein.
  
     0.402
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.