STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48958.1Oxidoreductase domain protein. (468 aa)    
Predicted Functional Partners:
AEI50415.1
Oxidoreductase domain protein.
  
  
  0.959
AEI50227.1
Oxidoreductase domain protein.
  
  
  0.935
AEI47090.1
Xylose isomerase domain-containing protein TIM barrel.
  
 
  0.917
AEI50704.1
Xylose isomerase domain-containing protein TIM barrel.
   
 
  0.905
AEI51733.1
Inositol oxygenase.
   
 
  0.901
AEI51019.1
Inositol monophosphatase.
    
  0.900
AEI51826.1
Inositol monophosphatase.
    
  0.900
AEI48314.1
Putative oxidoreductase.
 
     0.758
AEI48961.1
Hypothetical protein.
 
     0.710
AEI48960.1
Oxidoreductase domain protein.
 
     0.644
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.