STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48985.1Hypothetical protein. (511 aa)    
Predicted Functional Partners:
AEI48983.1
Nitrate reductase., Nitrite reductase (NAD(P)H).
 
     0.881
AEI48984.1
Major facilitator superfamily MFS_1.
 
   
 0.863
AEI48982.1
Rubredoxin-type Fe(Cys)4 protein.
 
     0.828
AEI47012.1
Hypothetical protein.
  
     0.658
AEI50425.1
Hypothetical protein.
  
     0.604
AEI47011.1
Phosphoesterase PA-phosphatase related protein.
  
    0.576
AEI48841.1
Nitrite reductase (NAD(P)H), small subunit.
 
     0.558
AEI49059.1
Xenobiotic-transporting ATPase.
  
     0.538
AEI51053.1
Xylose isomerase domain-containing protein TIM barrel.
  
    0.520
AEI50811.1
Hypothetical protein.
  
     0.511
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.