STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48996.1Hypothetical protein. (106 aa)    
Predicted Functional Partners:
AEI47012.1
Hypothetical protein.
  
     0.541
AEI47531.1
Hypothetical protein.
 
     0.536
AEI48995.1
Hypothetical protein.
       0.512
AEI46526.1
Hypothetical protein.
  
     0.460
AEI48640.1
Glycosidase related protein.
 
     0.454
AEI48853.1
ASPIC/UnbV domain protein.
  
     0.441
AEI49465.1
RagB/SusD domain-containing protein.
  
     0.439
AEI51873.1
Major facilitator superfamily MFS_1.
 
     0.435
AEI51872.1
Alpha,alpha-trehalase.
 
 
 0.425
AEI51838.1
Hypothetical protein.
  
     0.420
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.