STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48998.1UDP-galactopyranose mutase. (384 aa)    
Predicted Functional Partners:
AEI47217.1
UDP-galactopyranose mutase.
  
 0.957
AEI49764.1
Glycosyl transferase family 2.
    0.725
AEI49043.1
Outer membrane protein-like protein.
  
     0.688
AEI51815.1
Hypothetical protein.
  
     0.614
AEI49003.1
Alcohol dehydrogenase GroES domain protein.
 
    0.587
AEI50792.1
SMP-30/Gluconolaconase/LRE-like region-containing protein.
  
    0.511
AEI49757.1
Multi-sensor hybrid histidine kinase.
  
   
 0.476
AEI49491.1
Multi-sensor hybrid histidine kinase.
  
   
 0.471
AEI49510.1
DNA topoisomerase.
  
 
   0.436
AEI48997.1
Hypothetical protein.
       0.427
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.