STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49008.1Transcriptional regulator, AraC family. (307 aa)    
Predicted Functional Partners:
AEI49005.1
Protein of unknown function DUF779.
 
     0.733
AEI49006.1
Aldehyde Dehydrogenase.
 
     0.678
AEI51466.1
Transcriptional regulator, AraC family.
  
   0.648
AEI47228.1
Transcriptional regulator, AraC family.
  
     0.610
AEI50692.1
Transcriptional regulator, AraC family.
  
     0.607
AEI51414.1
Transcriptional regulator, AraC family.
  
     0.590
AEI49007.1
Hypothetical protein.
       0.551
AEI46957.1
Transcriptional regulator, AraC family.
  
     0.421
AEI50821.1
Transcriptional regulator, AraC family.
  
   0.412
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.