STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49011.1DNA mismatch repair protein mutS. (901 aa)    
Predicted Functional Partners:
AEI47259.1
DNA mismatch repair protein mutL.
 
 0.987
AEI48457.1
MutS2 protein.
 
 
0.933
AEI47860.1
DNA polymerase III, beta subunit.
  
 0.916
AEI48486.1
DNA polymerase I.
   
 0.911
AEI50209.1
single-stranded-DNA-specific exonuclease RecJ.
 
  
 0.701
AEI51212.1
tRNA modification GTPase mnmE.
 
     0.683
AEI49885.1
DNA repair protein RadC.
 
   
 0.664
AEI49012.1
Adenylate cyclase.
       0.655
AEI49566.1
Protein recA.
   
 0.648
AEI47201.1
Primosomal protein N'.
 
   
 0.637
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.