STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49028.1Hypothetical protein. (376 aa)    
Predicted Functional Partners:
AEI49029.1
Hypothetical protein.
 
    
0.787
AEI49030.1
Glycoside hydrolase family 2 sugar binding protein.
       0.762
AEI50413.1
Protein of unknown function DUF1565.
 
     0.726
AEI49023.1
Protein of unknown function DUF718.
 
     0.723
AEI49042.1
Fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
 
    0.693
AEI49020.1
Alpha-L-fucosidase.
     0.653
AEI49026.1
Hypothetical protein.
 
     0.623
AEI49025.1
Glycoside hydrolase family 29 (alpha-L-fucosidase).
     0.615
AEI49605.1
Hypothetical protein.
  
     0.570
AEI47434.1
Protein of unknown function DUF1549.
  
     0.562
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.