STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49070.1Methyltransferase FkbM family. (268 aa)    
Predicted Functional Partners:
AEI49071.1
Glycosyl transferase group 1.
    0.937
AEI49068.1
Cytochrome c class I.
       0.556
AEI49069.1
Protein of unknown function DUF820.
       0.556
AEI47348.1
Peptidase M56 BlaR1.
 
     0.547
AEI48911.1
Xylose isomerase domain-containing protein TIM barrel.
  
     0.487
AEI48870.1
Lanthionine synthetase C family protein.
  
     0.470
Runsl_0856
PKD domain containing protein.
  
     0.435
AEI47950.1
Hypothetical protein.
 
    0.428
AEI48003.1
ABC-2 type transporter.
  
  
 0.424
AEI47372.1
Secretion protein HlyD family protein.
 
     0.413
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.